[META] SPECIES.PRODUCTION_NAME = Hepialus_sylvina_k41 SPECIES.SCIENTIFIC_NAME = Hepialus sylvina SPECIES.COMMON_NAME = Orange swift moth SPECIES.DISPLAY_NAME = Hepialus sylvina SPECIES.DIVISION = EnsemblMetazoa SPECIES.URL = Hepialus_sylvina_k41 SPECIES.TAXONOMY_ID = 537462 SPECIES.ALIAS = [ Phalaena%20sylvina Triodia%20sylvina ] ASSEMBLY.NAME = k41 ASSEMBLY.DATE = 2014-10-23 ASSEMBLY.ACCESSION = ASSEMBLY.DEFAULT = k41 PROVIDER.NAME = Holland Lab PROVIDER.URL = https://ora.ox.ac.uk:443/objects/uuid:2309d584-4787-4799-be22-120d0ea8ade9 GENEBUILD.ID = 1 GENEBUILD.START_DATE = 2016-11 GENEBUILD.VERSION = 1 GENEBUILD.METHOD = import [GFF] SORT = 1 ; SPLIT = [ ##FASTA GFF CONTIG ] CHUNK = [ change region ] ; CHUNK = [ separator ### ] CONDITION1 = [ MULTILINE CDS ] CONDITION1a = [ MULTILINE cDNA_match ] CONDITION1b = [ MULTILINE match ] CONDITION2 = [ EXPECTATION cds hasSister exon force ] CONDITION3 = [ EXPECTATION cds hasParent mrna force ]; CONDITION4 = [ EXPECTATION exon hasParent transcript|mrna|trna|ncrna force ]; CONDITION5 = [ EXPECTATION mrna hasParent gene force ]; CONDITION7 = [ EXPECTATION ncrna hasParent gene force ]; CONDITION8 = [ EXPECTATION trna hasParent gene force ]; CONDITION9 = [ EXPECTATION transcript hasParent gene force ]; CONDITION10 = [ EXPECTATION cds|exon|mrna|transcript|trna|ncrna|gene <=[_start,_end] SELF warn ]; [FILES] ; A = [ txt https://ora.ox.ac.uk:443/objects/uuid:2309d584-4787-4799-be22-120d0ea8ade9 ] SCAFFOLD = [ fa http://download.lepbase.org/v4/provider/Swift_velvet_41_l500.fa.gz ] ; GFF = [ gff dummy.gff ] [GENE_DESCRIPTIONS] [GENE_STABLE_IDS] [GENE_NAMES] [TRANSCRIPT_DESCRIPTIONS] [TRANSCRIPT_STABLE_IDS] [TRANSCRIPT_NAMES] [TRANSLATION_STABLE_IDS] [EXTERNAL_DBS] [MODIFY] OVERWRITE_DB = 1 TRUNCATE_SEQUENCE_TABLES = 1 TRUNCATE_GENE_TABLES = 1 INVERT_PHASE = 1 [SCAFFOLD_NAMES] HEADER = 1 SCAFFOLD = [ /(.+)/ ]